Code for Analysis of Experimental Concentration Profiles

Fit diffusivity and free energy landscapes from raw and noisy experimental concentration profiles.

References

This package was used in the following publication:

Wolde-Kidan et al., "Particle Diffusivity and Free-Energy Profiles in Hydrogels from Time-Resolved Penetration Data", Biophys. J. (2021)

Please read the paper for details and cite it if using any of this code.

Installation

Prerequisites

You'll need Python3 with the scipy & xlsxwriter packages installed.

Linux/MacOS

sudo python3 setup.py install