add 'save_segmentation' option to prediction #118
Workflow file for this run
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| name: Conda Build | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set pytorch-3dunet version | |
| run: echo "RELEASE_VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV | |
| - name: Print pytorch-3dunet version | |
| run: echo $RELEASE_VERSION | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channels: local,conda-forge,defaults | |
| channel-priority: false | |
| - shell: bash -l {0} | |
| run: conda info --envs | |
| - name: Build pytorch-3dunet | |
| shell: bash -l {0} | |
| run: | | |
| conda install -q conda-build | |
| conda build -c pytorch -c nvidia -c conda-forge conda-recipe | |
| - name: Create pytorch3dunet env | |
| run: | | |
| conda create -n pytorch3dunet -c pytorch -c nvidia -c conda-forge pytorch-3dunet pytest | |
| - name: Run pytest | |
| shell: bash -l {0} | |
| run: | | |
| conda activate pytorch3dunet | |
| pytest | |
| conda deactivate | |
| - name: Deploy on conda | |
| if: ${{ startsWith( github.ref, 'refs/tags/') && success() }} | |
| env: | |
| ANACONDA_SECRET: ${{ secrets.ANACONDA_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| conda install -q anaconda-client | |
| anaconda -t $ANACONDA_SECRET upload $CONDA/conda-bld/**/pytorch-3dunet-*.tar.bz2 |