update-github #586

	name: update-github
	on:
	schedule: # daily
	- cron: "21 7 * * *"
	push:
	paths:
	- '.github/workflows/update-github.yaml'
	- 'data/publications.yml'
	workflow_dispatch:
	defaults:
	run:
	shell: bash -l {0}
	jobs:
	update-github:
	runs-on: ubuntu-latest
	permissions:
	contents: write
	steps:
	- name: Checkout workflowr.io
	uses: actions/checkout@v3
	- name: Checkout R package wio
	uses: actions/checkout@v3
	with:
	repository: workflowr/wio
	path: wio
	- name: Install Conda environment
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: wio/environment.yml.lock
	environment-name: wior-lock
	cache-environment: true
	cache-environment-key: ${{ runner.os }}-${{ hashFiles('wio/environment.yml.lock') }}-0
	- name: Install wio
	run: R CMD INSTALL --build wio/
	- name: Session information
	run: \|
	conda list
	Rscript -e "library('wio'); sessionInfo()"
	- name: Update GitHub
	env:
	GH_APP_ID: ${{ secrets.GH_APP_ID }}
	GH_APP_KEY: ${{ secrets.GH_APP_KEY }}
	crossref_email: ${{ secrets.CROSSREF_EMAIL }}
	TINY_API: ${{ secrets.TINY_API }}
	GITHUB_PAT: ${{ github.token }}
	run: Rscript bin/update-github.R
	- name: Commit changes
	if: github.repository_owner == 'workflowr'
	run: \|
	git config --local user.name "GitHub Actions"
	git config --local user.email "runneradmin@github.com"
	git status
	git diff
	git add content/*
	git commit -m "Update GitHub" \|\| exit 0
	git push
	# The default shell is for activating the conda env. This isn't
	# needed to perform the Git operations, and it interferes with
	# the trick above to only commit if there are changes
	shell: bash

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