abPOA-v1.5.3

• Fix a score matrix bug in pyabpoa
• Add consensus mode for pyabpoa: most frequent base at each pos

abPOA-v1.5.2

• Fix a backtrack bug in seeding mode (#66)
• Add consensus mode: most frequent base at each pos (-a1)

abPOA-v1.5.1

• Fix a memory allocation bug in v1.5.0 (caused by int overflow when memory is >4G)

abPOA-v1.4.3

• Fix pyabpoa installation on macos
• pip install also works now

abPOA-v1.4.2

Fix an installation bug

abPOA-v1.4.1

• Take quality score in FASTQ format file as weight (-Q)

abPOA-v1.4.0

• Allow to generate multiple consensus sequences from graph alignment (-d)
• Output sequence name by default in MSA format, remove -A/--msa-header

abPOA-v1.3.0

• Use SIMDE to handle SIMD instructions
• Set seeding as disabled by default, -S/--seeding to enable seeding, remove -N/--no-seeding
• Set min. size of POA windows as 500 in seeding mode
• Add -c/--amio-acid to align amino acid input sequences
• Add is_aa parameter in pyabpoa to align amino acid input sequences
• Fix CMakeLists.txt

abPOA-v1.2.5

• Fix a bug in abpoa_poa

abPOA-v1.2.4

• Fix score overflow bugs