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Feature/57 test biosimulators compatibility for a biosimulations model #76

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Feature/57 test biosimulators compatibility for a biosimulations model #76

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Commits on Nov 4, 2024

  1. draft adding list of cases to command line options

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    stellaprins committed Nov 4, 2024
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  2. Merge branch 'feature/68-add-remote-links-to-results-table-and-deal-w… 

    …ith-engines-that-seem-to-pass-but-have-the-wrong-results' into feature/67-update-test-suite-results
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    stellaprins committed Nov 4, 2024
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  3. update test suite 00001 table and draft for 01186 table

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    stellaprins committed Nov 4, 2024
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  4. add sedml and sbml files of case 01186

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    stellaprins committed Nov 4, 2024
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  5. update ansi_to_html

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    stellaprins committed Nov 4, 2024
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  6. remvoe test code for case handling

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    stellaprins committed Nov 4, 2024
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  7. enable processing of a given list of cases, or a limit of cases that … 

    …are processed sequentially when an empty lissed is passed
    @stellaprins
    stellaprins committed Nov 4, 2024
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  8. correct handling of cases in proces_test_suite script

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    stellaprins committed Nov 4, 2024
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  9. add full stop ad end of sentence in compatibility check messages in c… 

    …heck_file_compatibility_test function
    @stellaprins
    stellaprins committed Nov 4, 2024
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  10. exclude files ending with 'omex' in test suite results table

    @stellaprins
    stellaprins committed Nov 4, 2024
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  11. Improve compatibility messages. When files have an .xml extension but… 

    … 'sbml' or 'sbml' and 'sedml' in the filename they can be labeled as SBML and SEDML (test suite)
    @stellaprins
    stellaprins committed Nov 4, 2024
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  12. Merge branch 'development' into feature/67-update-test-suite-results

    @stellaprins
    stellaprins authored Nov 4, 2024
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Commits on Nov 5, 2024

  1. draft BioModels compatibility table

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    stellaprins committed Nov 5, 2024
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  2. store cache and sett Agg for matplotlib to prevent matplotlib windows… 

    … opening
    @stellaprins
    stellaprins committed Nov 5, 2024
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Commits on Nov 6, 2024

  1. add BIOMD0000000001 results table

    @stellaprins
    stellaprins committed Nov 6, 2024
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  2. simplify check_file_compatibility

    @stellaprins
    stellaprins committed Nov 6, 2024
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  3. fix broken plot links

    @stellaprins
    stellaprins committed Nov 6, 2024
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  4. Add usage instructions for specific test cases in compatibility test … 

    …script
    @stellaprins
    stellaprins committed Nov 6, 2024
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  5. Remove obsolete test suite results table script

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    stellaprins committed Nov 6, 2024
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  6. Merge branch 'feature/67-update-test-suite-results' into feature/57-t… 

    …est-biosimulators-compatibility-for-a-biosimulations-model
    @stellaprins
    stellaprins committed Nov 6, 2024
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  7. Remove test results table script

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    stellaprins committed Nov 6, 2024
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Commits on Nov 11, 2024

  1. Merge branch 'development' into feature/57-test-biosimulators-compati… 

    …bility-for-a-biosimulations-model
    @stellaprins
    stellaprins committed Nov 11, 2024
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  2. correct mistake reak ->break

    @stellaprins
    stellaprins committed Nov 11, 2024
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  3. improve check_file_compatibility_test function

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    stellaprins committed Nov 11, 2024
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  4. Add BIOMD0000000138 resutls table

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    stellaprins committed Nov 11, 2024
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Commits on Nov 12, 2024

  1. Add remove_output option to and modify biomodels script

    @stellaprins
    stellaprins committed Nov 12, 2024
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