Generate NF Manifest #97
Workflow file for this run
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| name: Devtools Tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - dev* | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| r-version: ['4.1.1'] | |
| env: | |
| SYNAPSE_PAT: ${{ secrets.SYNAPSE_PAT }} | |
| SCHEMATIC_URL_DEV: https://schematic-dev.api.sagebionetworks.org | |
| SCHEMATIC_URL_STAGING: https://schematic-staging.api.sagebionetworks.org | |
| SCHEMATIC_URL_PROD: https://schematic.api.sagebionetworks.org | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@f57f1301a053485946083d7a45022b278929a78a | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "devtools")) | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Add schematic base URL to Renviron | |
| run: | | |
| refName <- Sys.getenv("GITHUB_REF_NAME") | |
| if (grepl("v[0-9]+.[0-9]+.[0-9]+", refName)) { | |
| message("Testing using production schematic API instance") | |
| renviron <- "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_PROD }}'" | |
| } else if (refName == "main") { | |
| renviron <- "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_STAGING }}'" | |
| message("Testing using staging schematic API instance") | |
| } else { | |
| renviron <- "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_DEV }}'" | |
| message("Testing using dev schematic API instance") | |
| } | |
| # write .Renviron | |
| writeLines(renviron, ".Renviron") | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} |