start working on a simulation module · jeffersonfparil/poolgen@f36cf10

The following actions uses node12 which is deprecated and will be forced to run on node16: ATiltedTree/setup-rust@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Build | Compile | Test on test data: src/imputation/adaptive_ld_knn_imputation.rs#L7

unused import: `std::time::Instant`

Build | Compile | Test on test data: src/gp/penalise.rs#L5

unused import: `ndarray_linalg`

Build | Compile | Test on test data: src/imputation/adaptive_ld_knn_imputation.rs#L80

unused variable: `x`

Build | Compile | Test on test data: src/imputation/filtering_missing.rs#L20

unused variable: `p`

Build | Compile | Test on test data: src/imputation/filtering_missing.rs#L23

variable `n_missing` is assigned to, but never used

Build | Compile | Test on test data: src/gp/penalise.rs#L14

function `soft_thresholding` is never used

Build | Compile | Test on test data: src/gp/penalise.rs#L24

function `coordinate_descent` is never used

Build | Compile | Test on test data: src/imputation/adaptive_ld_knn_imputation.rs#L371

function `impute_aLDkNN` should have a snake case name

Build | Compile | Test on test data: src/popgen/gudmc.rs#L68

variable `recombination_rate_cM_per_Mb` should have a snake case name

Build | Compile | Test on test data

`poolgen` (bin "poolgen") generated 9 warnings (run `cargo fix --bin "poolgen"` to apply 3 suggestions)

Tests | Rust: src/imputation/adaptive_ld_knn_imputation.rs#L7

unused import: `std::time::Instant`

Tests | Rust: src/gp/penalise.rs#L5

unused import: `ndarray_linalg`

Tests | Rust: src/imputation/adaptive_ld_knn_imputation.rs#L80

unused variable: `x`

Tests | Rust: src/imputation/filtering_missing.rs#L20

unused variable: `p`

Tests | Rust: src/imputation/filtering_missing.rs#L23

variable `n_missing` is assigned to, but never used

Tests | Rust: src/imputation/adaptive_ld_knn_imputation.rs#L371

function `impute_aLDkNN` should have a snake case name

Tests | Rust: src/imputation/adaptive_ld_knn_imputation.rs#L484

function `test_impute_aLDkNN` should have a snake case name

Tests | Rust: src/popgen/gudmc.rs#L68

variable `recombination_rate_cM_per_Mb` should have a snake case name

Tests | Rust

`poolgen` (bin "poolgen" test) generated 8 warnings (run `cargo fix --bin "poolgen" --tests` to apply 3 suggestions)

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start working on a simulation module #331

Test (ubuntu-latest, stable)

start working on a simulation module #331

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