ci: Try using new CI from official nf-test tutorial

https://www.nf-test.com/tutorials/github-actions/

.github/workflows/ci.yml

@@ -39,34 +39,42 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
+        shard: [1, 2, 3, 4, 5, 6, 7, 8]
         NXF_VER: ${{ fromJson(needs.define_nxf_versions.outputs.matrix) }}
-        profile: ["bases2fastq", "bcl2fastq", "bclconvert", "fqtk", "sgdemux", "skip_tools", "mkfastq", "test_pe"]
+        profile: ["docker"]
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
+        with:
+          fetch-depth: 0
+
+      # - name: Set up JDK 11
+      #   uses: actions/setup-java@v2
+      #   with:
+      #     java-version: "11"
+      #     distribution: "adopt"
 
-      # Install Nextflow
-      - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v2
+      - uses: actions/setup-python@v4
         with:
-          version: "${{ matrix.NXF_VER }}"
+          python-version: "3.11"
+          architecture: "x64"
 
-      # Install nf-test
-      - name: Install nf-test
+      - name: Install pdiff to see diff between nf-test snapshots
         run: |
-          conda install -c bioconda nf-test=$NFTEST_VER
+          python -m pip install --upgrade pip
+          pip install pdiff
 
-      # Run nf-test
-      - name: Run nf-test
-        run: |
-          $CONDA/bin/nf-test test tests/pipeline/${{ matrix.profile }}.nf.test --profile=test,docker --junitxml=test.xml
+      - uses: nf-core/setup-nextflow@v2
+        with:
+          version: "${{ matrix.NXF_VER }}"
 
-      # If the test fails, output the software_versions.yml using the 'batcat' utility
-      - name: Output log on failure
-        if: failure()
+      - name: Install nf-test
         run: |
-          sudo apt install bat > /dev/null
-          batcat --decorations=always --color=always .nf-test/tests/*/output/pipeline_info/software_versions.yml
+          wget -qO- https://get.nf-test.com | bash
+          sudo mv nf-test /usr/local/bin/
+
+      - name: Run Tests (Shard ${{ matrix.shard }}/${{ strategy.job-total }})
+        run: nf-test test --ci --shard ${{ matrix.shard }}/${{ strategy.job-total }} --changed-since HEAD^ --profile "+${{ matrix.profile }}"
 
       - name: Publish Test Report
         uses: mikepenz/action-junit-report@v3