Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
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Oct 22, 2024 - Python
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cis-regulatory-elements
Here are 7 public repositories matching this topic...
Deep learning the cis-regulatory code for gene expression in selected model plants
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Mar 15, 2024 - R
Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability
bioinformatics
genomics
paper
gene-regulation
biological-data-analysis
mrna-stability
codon-optimality
cis-regulatory-elements
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Dec 19, 2021 - Jupyter Notebook
This repository contains custom code used for analysis in El Ghamrasni et al.,
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Apr 26, 2021 - R
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
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Apr 5, 2021 - Dockerfile
This project contains code used in my work on predicting gene expression from cis-regulatory sequences
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Oct 12, 2023 - R
Workflow to identify functional cis-regulatory regions for each annotated cell type
deep-learning
hi-c
promoters
enhancers
single-cell-rna-seq
single-cell-atac-seq
cross-species
shap
single-cell-methylation
single-cell-multiomics
cis-regulatory-elements
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Apr 17, 2024 - Python
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