SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

A course on genomics and bioinformatics from WU

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Single cell interactive plotting tools

Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX

So you want to do a: Single Cell RNA-seq experiment

An effective tool for single-cell RNA sequencing.

Tool for quick and standardized annotation of single cell transcriptomics data

Gotta keep the brain empty to learn more. This is my easily digestible backup.

10x Cell Ranger Docker Image

I've written a few functions that help me look through scRNA-seq data while working with Seurat.

single-cell-RNA-Seq-Data-Analysis-Methods

Creater: Charlene717

Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data

This repository contains pipelines and scripts for analyzing single-cell eQTL data using mixed models, which enable the control of structured expression data with the Julia programming language.