A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

Comprehensive tool for visualizing genome-wide cytosine data.

Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

adaptable and intrepretable,multi-task learning based gene-level methylation estimations

This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.

A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools

Practical and home works in the discipline Bioinformatics.

DNA methylation analysis pipeline for reduced representation bissulfite sequencing data

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

This is a repository to show my experience analyzing different kinds of epigenomics data.

Persimmon: DMR Finder

This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.

This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.

A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"

Differentially methylated regions analysis