A powerful and friendly tool kit for methylation analysis of DNA

Small minfi wrapper to convert IDAT files to beta values.

snakemake pipeline based on nanopolish

A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"

Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy

Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools

Persimmon: DMR Finder

This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.

Snakemake workflow for the processing of EMseq data

Differentially methylated regions analysis

This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.

Practical and home works in the discipline Bioinformatics.

adaptable and intrepretable,multi-task learning based gene-level methylation estimations

A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

Analyzing TCGA cohorts and multiomic data in R

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

This is a repository to show my experience analyzing different kinds of epigenomics data.

A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization

This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.