Generate an interactive dot plot from mummer or minimap alignments

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

Generate interactive dotplot from mummer4 output using plotly

Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

Python3 module for running MUMmer and reading the output

Converter Nucmer delta to bam

List of programs that facilitate extraction and processing of MUMmer data